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Microfluidic,high-throughput,single-cell,mechanotyping:Devices,and,applications

2023-02-07 19:00:08

Gihoon Choi, Zifan Tang, and Weihua Guan,2,b)

ABSTRACT The mechanical behavior of individual cells plays an important role in regulating various biological activities at the molecular and cellular levels.It can serve as a promising label-free marker of cells’physiological states.In the past two decades,several techniques have been developed for understanding correlations between cellular mechanical changes and human diseases.However,numerous technical challenges remain with regard to realizing high-throughput,robust,and easy-to-perform measurements of single-cell mechanical properties.In this paper,we review the emerging tools for single-cell mechanical characterization that are provided by microfluidi technology.Different techniques are benchmarked by considering their advantages and limitations.Finally,the potential applications of microfluidi techniques based on cellular mechanical properties are discussed.

KEYWORDS Microfluidic,Single-cell,Cell deformability,Mechanotyping

As the basic building blocks for living organisms,cells can effectively adapt to their microenvironment and respond accordingly by altering their biological,chemical,and physical properties.1–4Among these,the mechanical properties of the cell are determined mostly by cellular shells(e.g.,plasma membrane),integral structures of the cytoskeleton(e.g.,intermediate filament and microtubules),and the nucleus.5,6To date,various diseases and biological processes have been associated with alterations in cellular mechanical properties.Cellular mechanical properties have been used as potential markers for identifying pathological states.Examples include the decreased red blood cell (RBC) deformability in malaria7and in sickle cell anemia,8the stiffening of white blood cells (WBCs) in sepsis,trauma,and acute respiratory distress syndrome,9the increased cell deformability of invasive cancer cells,10and the variation in deformability during stem cell differentiation.6,11,12

To fully exploit the mechanical profilin of cells,detailed measurements with many cells are desirable for statistically signifi cant analysis of cell subpopulations.Current methods for mechanical phenotyping,such as atomic force microscopy (AFM),13–16micropipette aspiration(MA),17,18optical stretching,19–22and acoustic actuation,23,24provide detailed and accurate cell modulus measurements of a small subset of an entire cell population.However,owing to the slow detection speeds,the analyzed sample size is typically limited to less than 100 cells/day.By contrast,fluorescence-activate cell sorting(FACS),a commonly used technique for cell characterization,operates at a throughput of up to 104cells/s and allows real-time measurement of the cells for sorting purposes.

In this work,recent microfluidi high-throughput techniques for single-cell mechanotyping are reviewed and summarized.Singlecell mechanotyping involves three basic function modules:pressurization (actuation),examination (sensing),and sorting/separation(actuation).We summarize the state-of-the-art microfluidi techniques that are used in these areas to facilitate high-throughput single-cell mechanical studies.We benchmark these techniques based on their working mechanisms and discuss their advantages as well as ways in which they can be improved.We then summarize various applications based on microfluidi cell mechanotyping,ranging from cell separation to disease diagnosis to drug discovery.Finally,we present perspectives on the opportunities and challenges for further developing and applying microfluidic-base cell mechanotyping.

A.Physical constriction

One of the cell-stretching strategies adopted in microfluidi devices is to flo the cells into a geometric constriction where the channel walls squeeze a single cell.In this method,the level of cell deformation is mainly determined by the channel geometry,such as its width,although the driving force and shape of the constriction edges are also contributing factors.25,26Therefore,the channel geometry needs to be well matched with the cell diameter.Typically,the channel width is designed slightly smaller than the cell diameter to ensure cell deformation.However,the predefine channel geometry often limits the analysis of samples that are polydisperse in size(e.g.,whole blood),since the channel geometry is not adjustable.

During the past decade,constriction-based microfluidi technology has enabled high-throughput and precise quantificatio of individual cell deformability (Fig.1).Quantificatio of mechanical properties is achieved by measuring the time-dependent readouts (i.e.,transit velocity and transit time),which are often extracted from conductance changes [Figs.1(a) and 1(b)],10,27–30frame streams of optical imaging [Fig.1(c)].31and pressure drops across the constriction [Fig.1(d)].32The best reported measurement throughput so far is ∼500 cells/s by electrical measurement.7Such a measurement rate is significantl higher than that achievable by conventional deformability characterization methods,such as atomic force microscopy (AFM),micropipette aspiration,and optical tweezers.Owing to their high throughput,constriction-based methods are particularly useful for deformability measurements of biological samples (e.g.,RBCs,leukocytes,cancer cells,and stem cells),where a large number of samples need to be characterized to construct reliable statistics.The specifi examination techniques (high-speed imaging,electrical measurement,and buoyant mass sensing within a resonant cantilever)to indirectly measure time-dependent readouts will be discussed in Sec.III.

FIG.1.Physical constriction microfluidic device with various geometries and readouts for cell deformability measurement.(a)Conductance changes are monitored as the cell squeezes through the constriction pore.The width of the signal peak indicates the transit time.28(b)Two consecutive constrictions with different widths are used for cell size and deformability measurements.30 The transit time is measured electrically.(c)Size-independent deformability cytometry using real-time adjustable constriction.31 The system can control the constriction height for samples that are polydisperse in size.The cell transit velocity(or time)information is extracted from the time-dependent cell position in the microfluidic channel.(d)Microfluidic constriction-based pressure manometer.32 The change in y position directly indicates the pressure drop across the constriction during the cell translocation event.

The time-dependent readouts allow estimation of the elastic modulus or stiffness of cells by the following power-law rheological relation:33

wheret,ε,E,P,andβare time,strain,elastic modulus,pressure drop across the constriction,and power-law exponent,respectively.A higherβvalue implies more viscous behavior,while a lowerβcorresponds to more elastic behavior (typically,0.1–0.5 for living cells).For constriction methods,channel widthwand heighthare important design considerations determining the cell strainε.The following equation describes the maximum strain when the cell squeezes through the constriction(Rcelldenotes the cell radius before deformation):27

Typically,Reffis designed to be smaller than theRcellto ensure cell deformation at constrictions.Although several works have suggested thatReffshould be half ofRcell,the optimal channel width and height are often determined empirically,since various factors can affect the measurement,such as driving pressure,fluidi channel wettability,and friction.34

Constriction-type methods can be categorized as singlechannel or multichannel.The single-channel constriction method often faces challenges in distinguishing deformable cells when the cell transit time distributions closely overlap with each other.The transit time difference between cells can be amplifie to achieve more sensitive differentiation by using a more extended constriction channel.However,a more prolonged constriction is susceptible to irreversible channel blockage.As a compromise,a multi-constriction design can be considered.The idea is that each constriction channel length is short enough to avoid clogging,while a series of multiple constriction structures amplify the transit time differences [Fig.2(a)].35A sequential constriction array can also be used in a parallel scheme to increase both transit time difference and measurement throughput[Fig.2(b)].36,37

Similarly,the use of single constrictions in parallel has been reported to achieve high-throughput measurements at the singlecell level [Fig.2(c)].27,38,39With all parallel constriction methods,bypass channels are commonly used to provide a constant pressure drop across the constriction arrays and prevent clogging.Differential micro-constriction arrays have been used to investigate the cell deformation and relaxation process based on electrical impedance measurements[Fig.2(d)].Successive constrictions provide sensitive transit time information(T1+T2+T3+T4)as well as the relaxation index(T4/T1)of single cells at a measurement rate higher than 430 cell/min.40

Although the physical constriction method is an excellent technique for high-throughput and sensitive measurements of cell deformability,there is a fundamental limitation to be addressed.As the cell walls are in contact with the channel walls,time-dependent transit velocity(or time)-based deformability measurement is convolved with cell size and surface properties of cells and channel walls.34To some extent,it is possible to decouple the cell size,using adjustable constriction pores31and a physical constriction integrated with a microfluidi Coulter counter (particle size analyzer).29,30However,the approach to precisely decouple quantitative mechanical properties from convolved factors still need room for improvement.

FIG.2.Various multi-constriction methods.(a)Deformability-based flow cytometry using serial constrictions.35 (b)Microfluidic cell-phoresis device using sequential constrictions in parallel.37 (c) Quantitative deformability cytometry using a parallel constriction array for rapid and calibrated measurement.38 (d) Parallelized differential multi-constrictions in series for cell deformation and relaxation measurements.40

B.Hydrodynamic stretching

Hydrodynamic approaches measure the mechanical properties of cells by using intrinsic fluid-dynamica stresses that can be tuned by the geometry of the microfluidi channels.While adhesive properties of cells affect deformability measurements in the physical constriction method,contact-free hydrodynamic stretching can decouple this factor and provide direct evidence of cell deformability.Besides,heterogeneous cell sizes can be independently measured and considered in mechanical models to avoid misinterpretation of mechanical properties.Although additional upstream cell focusing(e.g.,inertial focusing45or viscoelastic focusing46) is required for the uniform stress field the hydrodynamic approach can deform the cell at high rates with sufficien strain(40%–50%).

The hydrodynamic stress exerted on cells in a microfluidi channel can be categorized into shear and compressive forces depending on the dominant flo regime.47For example,compressive force is dominant for cell deformation in the inertial flo regime (Reynolds numberRe≫1),while shear force is dominant in the shear regime(Re≪1).The following equations describe the compressive and shear forces:

where the flui velocityU,flui densityρ,viscosity of suspension mediumμ,channel cross-sectional areaA,cell radiusr,and drag coefficienCDare experimental or design parameters that can be adjusted to ensure sufficien cell compression.In addition,the work of Armisteadet al.47showed that the dominant force should be carefully chosen based on each application,since the deformability response showed different sensitivities to forces of the same magnitude but different types.For example,in the shear-dominated regime,there was greater sensitivity to deformations of the cell membrane and the cytoskeleton,while the inertial regime worked better for deformations of the cytosol and nucleus.

In 2012,Di Carlo’s group41reported a hydrodynamicstretching microfluidi device for identifying malignant cells in human pleural flui samples with a measurement speed of 2000 cell/s.Cells were focused on a narrow streamline near the center of a microfluidi channel and delivered to a cross-junction at a high flo rate,where they underwent mechanical stretching by perpendicular crossflow [Fig.3(a)].Cell deformations were captured using a high-speed camera,and images were analyzed offline to extract the cell volume and deformation index (DI).The throughput of the system was limited by accumulation of cells at the stagnation point in the cross-junction.Later work42rectifie this problem by a unique combination of a self-sheathing flo and a pinched flow resulting in a significan enhancement of throughput(up to 65 000 cells/s)[Fig.3(b)].Further advances were achieved by Ottoet al.,43who developed a real-time deformability cytometry(RT-DC)technique in which cells flowe through a funnel-shaped microfluidi channel and were deformed by hydrodynamic stress and a pressure gradient[Fig.3(c)].Since the funnel-shaped channel was wider than the cell diameter,the cells were deformed without physical contact.The deformability was measured by monitoring cell circularity changes in real time,with analysis rates greater than 100 cells/s being achieved.Beyond characterization of deformability,real-time systems have excellent potential for label-free singlecell-level cell sorting based on mechanical properties.Besides,the simple funnel-shaped channel structure is easy to scale up for multiplexing.The parallelism of the flow-induce cell deformation was demonstrated by Ahmmedet al.44in multi-sample deformability cytometry.Their array device consisted of 10 funnel-shaped fluidi channels that simultaneously deformed cells at a rate of 100 cells/s per channel,allowing analysis of multiple samples with high throughput[Fig.3(d)].

FIG.3. Cell deformation using various hydrodynamic stretching microfluidic device geometries:(a)cross-junction;41 (b)hydro-pipetting with cross-junction;42(c)funnel shape;43(d)funnel-shaped fluidic channel array.44

The abovementioned hydrodynamic approaches have their limitations,however.In the cross-junction method [Figs.3(a) and 3(b)],uneven cell deformation may occur owing to flo instability and intrinsic asymmetry of the hydraulic resistance displacing the cells from the stagnation point.A key challenge for the funnelshaped microchannel approach [Fig.3(c)] is nonuniformity in the shear stress and hydrodynamic pressure within the microchannel,causing irregular cell deformation forces.To address this problem,the cells must be well aligned in the center of the channel using burdensome sheath fluid or various hydrodynamic focusing techniques.Finally,the cell size and shape affect the stress fiel in the flui that acts on the cell to deform it.Therefore,novel approaches to decouple these interfering factors are needed for mechanical property measurements.

C.Optical stretching

Another approach to deform cells is through optical forces.In the past,various optically based noncontact cell manipulation methods were reported,including optical tweezers and traps.However,the small magnitude of optically induced forces(less than a couple of hundred piconewtons) is insufficien for stiff cell deformation,which often limits their application to mechanotyping.To address this problem,optical stretchers were developed.The firs microflu idic optical stretcher was developed by Gucket al.19to study the deformability of circulating cells (e.g.,RBCs and human epithelial breast cancer cells).The stretching mechanism was based on the nanonewton-range light-induced surface force exerted on a cell by two nonfocused counterpropagating Gaussian laser beams.While low intensities of the laser beams were used to localize the cells,higher intensities (a few milliwatts) were used to stretch the cells along the axis of the beams.The stretching forces were generated by the momentum transfer that occurred at the interface between the cell and the surrounding medium owing to a refractive index change.As a result,there was sufficien surface force to stretch the localized cell.

The throughput of optical stretchers has gradually been improved.In further work by Gucket al.,22an optical stretcher was integrated with a microfluidi system that continuously placed cells in the trapping and stretching zone.With automated flo control,a deformability measurement rate of 1 cell/min was achieved.In this system,the rate-limiting factor was determined mainly by the imaging time for observing the small creeping cellular deformation.In 2013,Sawetzkiet al.48characterized the viscoelastic properties of healthy and malaria-infected RBCs (iRBCs) at a measurement rate higher than 20 cells/s using a high-frequency modulated deformation force.

Although the throughput of optical stretchers is higher than that of conventional AFM,micropipette aspiration(∼0.1 cell/min)is still not comparable to that of the microfluidic-base deformability measurement methods such as physical constriction and hydrodynamic stretching mentioned above.However,the working principle of optical stretchers is independent of flo characteristics,and it thus allows characterization of time-dependent mechanical properties of cells,such as stress relaxation49,50and creep indentation.51To avoid radiation damage to cells,the laser intensities and wavelength need to be carefully selected.

Various microfluidi techniques to compress cells for deformability characterization are summarized in Table I.

A.Imaging (endpoint analysis)

Perhaps the most intuitive way to examine cell deformability is by measuring the changes in cellular shape corresponding to an applied force on cells[Fig.4(a)].The cellular deformation is quantifie by measuring the DI or stretch ratio(e.g.,cell circularity and aspect ratio)using high-resolution imaging.41,42,53–55One of the key benefit of the imaging method is the direct observation of cellular motion,providing information about cell deformability and the dynamic behavior of the cell.For example,using a high-speed imaging camera,Forsythet al.54,56observed three different types of RBC deformation dynamic motion in a microfluidi funnel-shaped capillary at different shear rates:stretching,tumbling,and recoiling.For characterization of the viscoelastic properties of RBC membranes,Tomaiuoloet al.57measured the circularity change induced by the converging/diverging flo in multichannel microfluidi devices.

Another imaging-based characterization was achieved by measuring the quantitative parameters (e.g.,transit time,transit velocity,and entry time) as indirect indicators of cell deformability as the cell squeezed through a physical constriction [Fig.4(b)].In this case,the time-dependent cell position and its corresponding timestamp were monitored using a high-resolution camera.The less-deformable cells spent more time squeezing through the microconstriction than the more deformable ones.For instance,Houet al.58investigated the bioreheological behavior of breast cancer cells in a microscale constriction.In their study,nonmalignant and malignant cells were distinguished by quantitative measurements of entry time,transit velocity,and elongation index from video images.

Several concerns have been reported with regard to imaging methods:(i)high-resolution image-recording setups are expensive,(ii) well-controlled hydrodynamic cell manipulation (e.g.,focusing and spacing) is required to locate a cell at the focal spot,and (iii)post-image analysis is a time-consuming process and requires massive image data storage and computational power,limiting the actual throughput (i.e.,from sample loading to completion of deformability analysis).For real-world applications,the development of deformability flo cytometry has been changed from endpoint to real-time analysis.

B.Electrical measurements

In constriction-based deformability characterization(Sec.II A),indirect quantitative parameters for cell deformability are often measured by electrical readouts.The transient changes in electrical current are induced by channel blockage during cell translocation,since current disruption occurs owing to the reduced conduction at the physical constriction.

FIG.4. Schematics of various deformability measurement methods.(a)Deformability is measured by changes in the aspect ratio of the cell through image processing.(b)Cell position and time are extracted by image analysis,yielding the transit time(an indirect deformability indicator)of cell translocation at a funnel-shaped constriction channel.(c) DC sensing is used to obtain ionic current dips,providing the cell transit time.(d) AC measurements monitor resistance/impedance changes to obtain the transit time.(e)A mechanical cantilever measures buoyancy forces and their resonant frequency.The transit time,entry time,and passage time can be extracted from the resonant frequency profile.

Among various deformability characterization methods,electrical measurements offer the benefit of (i) high throughput,(ii) simplicity,(iii) automation,and (iv) biocompatibility.However,cell transit time is a complicated function of various parameters:applied pressure,cell size,cell deformability,constriction channel dimensions,and polydimethylsiloxane (PDMS) and cell surface properties.34,59Therefore,precise time-dependent readouts are often required,with well-define control parameters,to distinguish cell deformability from convolved parameters.In an effort to resolve the cell deformability from the size,Sanoet al.30used two consecutive constrictions with different channel widths to measure size and deformability during translocation events.

Figures 4(c) and 4(d) depict the simplest two-electrode sensing design.Both schemes measure the impedance changes during a cell translocation event using an impedance analyzer (e.g.,a transimpedance amplifie or a lock-in amplifier) An early microfluidics based impedance sensor for electrical classificatio of single RBC deformability was devised by Katsumotoet al.60A microfluidi chip with channels integrated with a pair of coplanar microelectrodes was used to measure the normalized resistance changes corresponding to the shape of cell deformation in high-shear microchannel flows Owing to the positional dependence of the AC measurements,the amplitude obtained could vary based on thezlocation of the cell from the electrode surface.To enhance measurement accuracy,physical constriction channels with electrical sensing have been proposed.For example,Adamoet al.61demonstrated the dependence of transit time,size,and stiffness of HeLa cells by monitoring resistance changes.A similar method was achieved by Zhenget al.28to compare the biophysical properties of adult and neonatal RBCs using electrical signatures(namely,transit time,impedance amplitude,and phase).For optimal AC measurements,a frequency range of 10–200 kHz is typically recommended to provide a compromise between temporal resolution,double-layer capacitance,and sensitivity.Electrochemical degradation of electrodes is a significan problem for long-term electrical measurements,since it causes a baseline shift,lower signal-to-noise ratio(SNR),and lower sensitivity.A key benefi of using AC voltage is suppression of electrode polarization,resulting in reduced electrode degradation and fewer air bubbles in microfluidi channels.

C.Mechanical measurements using cantilevers

The firs suspended microchannel resonator(SMR)was developed for biomolecular detection by Burg and Manalis.62An SMR contains a microfluidi channel embedded in a silicon cantilever.When biomolecules pass through the microfluidi channel,their buoyant mass changes the resonant frequency of the cantilever.Using this principle,SMRs have been used for detection of biomolecules63and for measuring the buoyant mass,density,and volume of single cells.64–66The SMR technique has been used to characterize cell deformability and surface friction.10Unlike previous applications of SMRs,a physical constriction was added to the embedded microfluidi channel to deform the cells.By monitoring the shift in the resonant frequency,cell entry,transit,and total passage times were extracted to provide an indirect characterization of cell deformability[Fig.4(e)].The physical contact of cells with the constriction channels makes SMR a method of choice when cell friction or retention is of interest.67The resonant cantilever is an extremely sensitive microdevice and can measure the center of mass and buoyant mass with precisions of 100 nm and 1 pg,respectively.However,the fabrication of microfluidic-channe embedded cantilevers is complex owing to the multiple steps of wafer thinning and dry etching that are required.In addition,the lack of transparency of the channel limits the ability to use an optically integrated microfluidi system for co-measurement.

D.Real-time measurements

Time-dependent cell deformability measurements are often required to acquire data at a high sampling/frame rate (105samples/s).41While a high sampling rate produces excellent time resolution for monitoring cell deformation,it generates a massive amountof data for burdensome off-line analysis,consuming tremendous computational time.Therefore,the true meaning of throughput with considering deformability analysis is much less (∼10 cells/s)than the reported measurement throughput.To address this limitation,the need for real-time deformability measurements has been recognized.

TABLE II.Summary of representative microfluidic deformability characterization devices.

On-the-fl cell deformability measurement was firs reported in RT-DC in 2015 by Ottoet al.43They used an online image analysis algorithm that continuously acquired images from a high-speed CMOS camera at 2000–4000 frames/s and quantifie the DI and size(cross-sectional area).The real-time analysis significantl reduced the memory space needed for image recording and computational cost,enabling high-throughput cell deformability characterization(several hundreds of cells per second).A similar imaging-based real-time approach at an even higher frame rate(100 000 frames/s)was applied in an inertial microfluidi cell stretcher (iMCS),proving its ability to process an unlimited amount of data.68The firs real-time electrical measurement was achieved using differential impedance measurement at a sampling rate of 1 MHz.69The cell passage time at the constriction was extracted from the electrical signal using a simple peak detection algorithm,which reduced the computational complexity of real-time measurement.This offers great potential for label-free real-time deformability-activated single-cell sorting.70,71

Representative microfluidi deformability characterization devices are summarized in Table II.

A.Collective cell separation

Specifi cell types and states often exist with other components that are not of interest.Obviously,in a heterogeneous cell population,different subpopulations will have different biophysical and biomechanical characteristics,resulting in a biased analysis.73This is the case for mechanotyping research,which investigates cell mechanics to study functional changes in cells during pathological alteration/metastasis and physiological cellular processes (e.g.,differentiation,proliferation,and motility).Therefore,a preparative cell separation step based on biophysical properties is required to examine the subpopulations individually.

In recent years,numerous label-free microfluidi approaches have been developed to facilitate qualitative passive separation without reliance on any external forces and based on mechanical properties.These passive techniques contribute to high-throughput separation of subpopulations in continuous flow However,other performance metrics (e.g.,recovery rate,purity,enrichment,and efficiency vary depending on the different separation mechanisms,microfiltration deterministic lateral displacement (DLD),compression ridges,crossflo ratchets,and inertial microflu idics (Fig.5).Although many label-free microfluidi techniques separate subpopulations on the basis of biophysical properties(e.g.,size,density,electric polarizability,adhesion,and cell contents),74we focus in this review only on deformability-based separation.

1.Microfiltration

Microfiltratio is perhaps the most straightforward and intuitive approach to separate micro-and nanoscale cells based on their size and stiffness.Microfabricated porous membranes,75–78micropillars,78–80and weirs78,81are extensively used as filters Typically,the pore size of the filte is designed close to the cell size to achieve high particle capture efficiency There are two types of microfiltratio methods:dead-end77,82,83and crossflo75,76fil tration.Briefly the flo direction faces the dead-end filte plane,whereas it is parallel to the filte plane in crossflow The deadend approach effectively filter large and stiff cells,but it is prone to clogging,which reduces its selectivity.In crossflo filtration an additional sheath flo pushes the cells toward the filter while the crossflo continuously flushe away large and stiff cells captured at the filte interface [Fig.5(a)].Thus,this combination of sheath and crossflo enhances purity and throughput by reducing the risk of clogging.To achieve optimal separation performance,the selection of sheath flo and crossflo is critical.For example,an excessive crossflo rate will decrease the chance of filtration resulting in reduced separation purity.84By contrast,declogging is less effective with extremely low crossflow leading to a reduced recovery rate.75,78Although various microfluidi filtra tion methods have been reported,74,85none of them simultaneously provides high recovery efficiency purity,and throughput.Furthermore,sample loss and clogging are inherent challenges to be addressed.

2.Deterministic lateral displacement(DLD)

FIG.5.Various label-free,continuous,and passive bulk cell separation methods based on cell deformability.(a)Porous membrane microfiltration using crossflow.75 While larger and stiffer white blood cells are captured at the filter entrance,small and softer red blood cells pass through the filter.(b) Deterministic lateral displacement.90 Repeated laminar flow fields are depicted with a circular-post array.Stiffer cells shift between streamlines as they pass through the post array,while soft cells are deformed and remain in the original streamline.(c)Diagonal compression ridge.95 Soft cells are displaced in the negative transverse direction from the channel axis,while stiff ones move in the positive transverse direction.Two sheath flows align the cells at the channel axis.(d)Resettable cell traps.102 The constricted diaphragm forms traps to capture the cells of interest,while unwanted cells flow through these traps and are collected in the waste outlet.The relaxed diaphragm enlarges the channel dimensions to clear the microchannel.(e)Microfluidic ratchet sorter.106 This provides continuous deformability-based cell separation using oscillatory flow and tapered contractions.The moredeformable cells travel farther up than stiffer ones.Crossflow propels the cells in the horizontal direction toward the collection outlets.(f)Inertial microfluidics.110 The inertial lift force FL and viscoelasticity-induced force FV are oppositely directed,and their combined effect thus determines the effective cell position in the channel.Deformable cells tend to stay in the center near the channel axis,while stiff cells move toward the channel walls.

DLD is another well-established passive separation technique that has been extensively explored over the years.The firs DLD method was introduced in 2004 by Huanget al.86Although early approaches using DLD focused only on size-based separation,87additional sorting targets such as deformability,shape,and internal viscosity have since attracted interest.87–90In 2014,Holmeset al.91showed for the firs time that there was a direct correlation between cell stiffness and lateral displacement in a DLD device.The deformability-based separation mechanism relies on the structure and geometry of the obstacle array,which determine the laminar flo field [Fig.5(b)].90,91In principle,infinitesimall small nondeformable particles will never switch to another streamline without an external force.However,deformable particles of finit size can move to other laminar flo streams because their hydrodynamic radius(or stretched size)decreases between the micropillars,where the shear stress is greatest.Since the row of micropillars is repeated after a certain distance,the streamline position is related to changes in the array.Therefore,the relative position of a cell is also gradually displaced based on its deformability as it passes through each row of micropillars [Fig.5(b)].90The resolution of the cell separation depends on the degree of cell deformation,which can be varied by adjusting the micropillar geometry(i.e.,the shape of the micropillars,the gap between them,and the number of iterations of the array) and flui stresses.87,92–94It has been demonstrated that sharp-edged micropillars(i.e.,diamond or triangular in shape) are more effective at deforming cells by bending them strongly,and thus significantl enhance the sensitivity of a DLD.94A high flo rate induces strong shear stress to deform cells,thus enabling distinct separation of deformable cells.87,92,93Therefore,it is essential to select the optimal separation parameters according to cell types and downstream applications.With signifi cant efforts,current deformability-based DLD devices have achieved excellent purity (>90%) with a reasonable separation rate (∼106cells/h).90However,clogging due to fouling at the micropillar structures and the channel surface requires special attention for robust separation.

3.Compression ridges

Continuous and nondestructive cell separation can be achieved using a periodic diagonal ridge array attached to the top wall of the microfluidi channel [Fig.5(c)].95The gap between the diagonal ridge and the channel bottom forms a geometric constriction that compresses cells as they squeeze through periodically.The cell separation trajectory is determined by the interaction between the hydrodynamic drag force and the stiffness-dependent elastic deformation force,in opposing transverse directions.85,96While the hydrodynamic force is dependent on the secondary circulatory flow the elastic force is a function of cell stiffness.As a result,the cell trajectory gradually diverges at elastic and hydrodynamic equilibrium.97The height of the constriction can be adjusted to vary the stiffness-dependent elastic force and thus determine the degree of cell deformation.Therefore,the constriction height is a critical parameter to increase the displacement in the transverse direction,thus enhancing separation resolution.The flo rate is another separation parameter with a direct effect on the hydrodynamic force imposed on cells.It has been experimentally validated that the flo rate does not contribute significantl to separation.96The ridge width is usually set close to the cell diameter.While a small width produces insufficien elastic force for successful separation,with a large width there is a high chance of unwanted cell adhesion and irreversible clogging.The ridge angle is typically designed to be 45○to the channel axis,since the maximum hydrodynamic force can then be induced for an optimal separation effect.85,96Ridge spacing is a control parameter for cell relaxation,which can be used to observe cellular viscoelastic behavior.98The use of a diagonal compression ridge accommodates a high degree of cell deformation to enhance the separation effect,especially with regard to purity(99%)and throughput(250 cells/s).96Another key attribute of this separation technique is that it is less sensitive to variations in cell size.96

4.Resettable cell traps(RCTs)

Channel clogging is a significan challenge for most passive separation methods.Several tunable microfluidic-base approaches to address clogging have been reported.99–102The idea is to periodically clear the microfluidi channel before blockage by expanding the channel height using active pneumatic pressure control.Tunable height also enables precise control of the degree of cell deformation,and thus the selectivity of separation can be adjusted for different samples.Huanget al.100described a proofof-concept tunable microfilte in 2009.The tunable filter/tra was integrated with conventional dead-end membrane microfiltratio methods.Various configuration of valve actuation and flo operation enabled size-dependent selective separation of cells with high separation efficienc (82%–89%) at a reasonable filtratio rate (3.3–14.9μl/min).A similar tunable approach was used in a resettable cell trap (RCT) mechanism introduced by Qinet al.102and Beattieet al.101The RCT device used cell traps and a flexi ble diaphragm to achieve size-and deformability-based separation[Fig.5(d)].

The diaphragm periodically closed (constricted) and opened(relaxed)the main flo channel by pneumatic control[Fig.5(d)].102When the diaphragm was closed,large and stiff cells were captured in traps,while small and soft cells passed through the constriction.The diaphragm was periodically opened to clear the flo channel to prevent clogging and fouling.This RCT device had center and side fin to support the channel structure when the diaphragm was inflated Thus,a well-controlled rectangular channel and rectangular aperture were formed [Fig.5(d)].This structure offered improved separation performance in terms of sensitivity and selectivity compared with an earlier tunable microfil ter.100In addition,three-stage trapping and filtratio significantl enhanced sample enrichment(183-fold)and yield(93.8%).Parallel RCTs provide a high separation rate of ∼15 000 cells/min.102Furthermore,clogging-free passive separation is a strong attribute of RCTs.However,the separation marker for the filtratio is a combination of cell size and deformability,and so this approach is not suitable for applications when separation must solely rely on cell deformability.

5.Microfluidic ratchets

Guoet al.103firs explored a microscale deformability-based ratchet mechanism in 2011.Cell deformability was coupled with a local asymmetry to induce an irreversible ratchet mechanism.The unidirectional cell transport thus obtained suggests the possibility of selective cell separation based on deformability.103In later work,a microfluidi ratchet device for high-throughput deformabilitybased cell separation was demonstrated104and used for phenotypic separation of various samples (e.g.,leukocytes,cancer cells,and malaria-infected RBCs).105–108The separation mechanism used funnel-shaped constriction arrays,whose width was designed larger than the cell diameter,while the exit side was smaller.104This structure only allowed small and deformable cells to ratchet through the tapered constrictions,while large and stiff ones were blocked.The size of the funnel opening gradually decreased from the bottom row (sample inlet side) to the top row (collection outlet side)[Fig.5(e)].Thus,a particular diagonal trajectory was formed by oscillatory flo (i.e.,clogging and de-clogging flow) which propelled the cell population.106The captured cells were unclogged by a subsequent reverse de-clogging flo and flushe out toward the designated collection outlet by a crossflo [Fig.5(e)].A reverse flo approach has been used in microfiltratio to address clogging.However,the reverse flo often pushed back the initially separated cells,resulting in low filte selectivity.104In microfluidi ratchets,compressing cells through a tapered constriction along the direction of the funnel requires less threshold pressure than compressing them in the opposite direction.74,104Such physical asymmetry with oscillatory flow imposes unidirectional and irreversible cell transport,enabling selective cell separation.Advanced microfluidi ratchet-based separation methods stand out in terms of separation rate (0.5 × 106cells/h),purity (98%),and enrichment (104-fold).105–107In addition,the irreversible cell transport provides excellent selectivity and scalability,with a low risk of clogging.

6.Inertial microfluidics

Various inertial microfluidi techniques for particle and cell manipulation,mostly particle focusing,were firs explored by Di Carloet al.45in 2007.In subsequent work,109they were able to achieve inertial microfluidi separation by adjusting the particle focusing position based on particle size.The firs deformabilitybased separation using inertial microfluidic was introduced by Huret al.110in 2011.In confine flow lateral migration of particles can be induced by the effects of the inertial lift force,which is a function of particle Reynolds number.74,110Since the particle Reynolds number depends on intrinsic characteristics,particles with different deformabilities have distinct inertial focusing positions in the microfluidi channel.Huret al.110used this lateral migration phenomenon in a straight microfluidi channel to separate deformable particles without external forces.There are additional lift forces on deformable particles,such as the viscoelasticity-induced force,which is dependent on particle size and rigidity.The balance between the deformability-induced lift force and the inertial lift force determines the equilibrium position in the channel.Therefore,these differences in lateral equilibrium position have been used to separate and collect particles based on their deformability.For example,more-deformable particles move away from the channel walls owing to the extra viscoelasticity-induced force.By contrast,stiffer particles are positioned near the channel wall owing to the dominant inertial lift force[Fig.5(f)].More recently,Guzniczaket al.111used a spiral microchannel to add curvature,which accelerates the deformable particle displacement and significantl reduces the travel distance compared with a straight microchannel and significantl improves the separation throughput(∼3×106cells/min).An inertial microfluidi sorter can achieve high throughput for large-scale enrichment without any microfiltration Thus,clogging is no longer a concern.

B.Active single-cell sorting

In passive sorting,the sorting boundaries cannot be adjusted during an experiment,since the flo geometries are predetermined according to intrinsic cellular mechanical properties.This often limits comparison experiments that require a sorting condition to be varied within the same device.Besides,an individual particle’s quantitative deformability information is inaccessible with passive sorting.Thus,deformability-based active sorting is an attractive option to overcome such limitations.However,surprisingly,there have been only a few works demonstrating streamlined active single-cell/particle sorting capability with deformability characterization.

The firs active single-cell sorting method was reported by Faigleet al.112in 2015.An optofluidi device was integrated with an optical stretcher to trap,examine,and sort individual cells in sequence[Fig.6(a)].Two counterpropagating Gaussian laser beams were used to measure single-cell compliance in real time as an indicator of deformability (see Sec.II C).For the sorting mechanism,asymmetric laser profile were used to displace the cells from the center axis of the microfluidi channel toward the desired collection chamber.Unlike passive bulk cell separation,the throughput of an active sorting system is affected by both sensing and sorting rates.The slow process of optically based deformability sensing is an inherent rate-limiting factor for rapid sorting in continuous flow To address this throughput challenge,sorting real-time fluorescenc deformability cytometry (soRT-FDC) [Fig.6(b)] was devised.70The system combined a previously reported real-time flu orescence and deformability cytometry (RT-FDC)72and a downstream standing surface acoustic wave (SSAW)-based active cell sorter.113Compared with the optofluidi sorter [Fig.6(a)],soRTFDC significantl improved the sorting throughput(100 cells/s)by exploiting hydrodynamic stretching for rapid deformability characterization.However,the high SSAW power required for rapid cell deflectio may cause overheating and degrade chip integrity and cell viability.

Choiet al.71developed a cytometry-like deformabilityactivated sorting device that seamlessly integrated single-particle deformability sensing and subsequent active hydrodynamic sorting into a single microfluidi chip [Fig.6(c)].By adopting rapid constriction-based real-time deformability sensing,the system throughput was improved.However,the relaxation time,which is an intrinsic limitation of hydrodynamic sorting,still slows down the sorting process.Besides,it often causes incorrect sorting by missing the sorting timing.Li and Ai114reported phenotyping-activated cell sorting,which integrates real-time electrical impedance measurement with acoustic sorting.The impedance measurement can be used to probe the cell transit time at a constriction for characterizing cell deformability.Besides,sensing electrodes can be configure to determine cell viability by measuring cellular impedance.Propagation of traveling surface acoustic waves (TSAWs) generates a radiation force and an acoustic streaming flow-induce drag force on spherical cells,enabling fast active sorting.Like other deformabilityactivated single-cell/particle sorting techniques,upstream flo cell alignment and well-define cell spacing will further improve the sorting performance.

Just as fluorescence-activate cell sorting(FACS)allowed identificatio of the molecular characteristics of a leukocyte subpopulation based on immunophenotypes,115,116mechanotyping-based sorting offers a unique opportunity to understand the molecular underpinnings of cellular mechanics.To this end,there is an urgent need for throughput comparable to that of FACS(30 000–40 000 cells/s) and a reliable device that actively sorts large populations of cells one by one based on their mechanical phenotype.

Microfluidi deformability-based cell sorting devices are summarized in Table III.

A.Erythrocytes

Red blood cells(RBCs)or erythrocytes have a unique deformability that allows reversible changes in shape under external forces.This mechanical property plays a critical role in circulating RBCs by allowing them to carry oxygen and carbon dioxide through the microvessels and fenestrated capillaries of the splenic sinusoids.118It has been realized that cell deformability can be altered under various pathophysiological conditions.119Thus,measuring RBC deformability can be a valuable indicator to help in understanding hematological diseases and their progression.

In recent years,various microfluidi techniques have been established to measure RBC deformability and thus provides a novel approach to hematological diseases.For example,extensive research has been conducted on malaria by investigating hematological abnormalities.The stiffness of RBCs increases more than 10-fold when they are infected with thePlasmodium falciparumparasite.35,59,120–122This mechanical change causes occlusions in the peripheral capillaries and spleen,123disrupting oxygen transport to downstream organs and tissues and leading to necrosis.Changes in RBC deformability have also been found in other blood-related diseases,such as sickle cell anemia,sepsis,and diabetes.124,125

The importance of deformability naturally extends to the therapeutic benefit that the microfluidi separation of diseased RBCs or pathologically activated white blood cells(WBCs)can offer.Unadulterated healthy blood cells can be reintroduced to the patient,with abnormal cells being eliminated by microfluidi separation based on cell mechanics.Such dialysis-like therapeutic approaches126remove over-activated immune cells such as neutrophils,127malignant bone marrow cells after autologous transplantations,128stiffer malaria-infected cells,and sickled RBCs during a sickle-cell crisis.129

B.Stem cells

Over the past decades,extensive efforts have been made to reveal how the mechanical properties of stem cells affect their pluripotency and differentiation.130During the stem cell differentiation process,changes in gene expression and protein abundance modify the cytoskeletal structure,resulting in differences in cell deformability.131,132For example,Pajerowskiet al.133found that nuclei of human embryonic stem cells become six times stiffer after terminal differentiation.Similarly,Chowdhuryet al.134found that differentiated mouse embryonic stem cells are 10-fold stiffer than in their undifferentiated stage.Although it has been recognized that biological and mechanical factors are mutually correlated during differentiation,the molecular changes that result in such differences have not yet been fully unveiled.Measuring the mechanical properties of stem cells at each stage of differentiation will provide clues to answer this question.

Separation/enrichment based on stem cell mechanical properties,as a label-free biomarker,has tremendous potential for application in regenerative medicine.Ekpenyonget al.135observed that changes in cellular viscoelastic properties determine the fate and function of myeloid precursor cells in the blood and suggested these changes as a cell differentiation marker that could be used for therapeutic purposes.Gonzalez-Cruzet al.136also noted that sorting-based enrichment using mechanical biomarkers (i.e.,elastic and viscoelastic properties) of adipose-derived stem cells,correlating with the ability to produce tissue-specifi metabolites,had implications for cell-based regenerative therapies.Bongiornoet al.14reported that cell stiffness as a single-cell osteoblast differentiation biomarker allowed enhanced enrichment of starting cell populations for stem cell therapies.These observations all suggest that the mechanical properties of stem cells are an excellent enrichment target for regenerative therapies.

Pluripotent stem cells have the potential to differentiate into any type of cell in the body.Therefore,implantation of differentiated cells from pluripotent stem cells is a promising approach to cure diseases such as heart failure,retinal and macular degeneration,tendon ruptures,type 1 diabetes,immune-system disorders,and neurological diseases.However,for a wide range of stem cell implementations,there are many risk factors that must be taken into account(e.g.,inaccurate stem cell types,variations in differentiation status,proliferative capacity,contamination duringin vitroculture and other manipulation steps,irreversibility of treatment,high risk of tumor formation,unwanted immune responses,and the transmission of adventitious agents).137,138According to the U.S.Food and Drug Administration (FDA),quality control is essential in the manufacture of cellular therapy products to reduce such risks in stem cell-based therapies.139High-throughput microflu idic devices that separate cells based on their mechanical phenotypes can play an essential role in such quality control by providing the required scalable cell separation tools to eliminate tumorforming stem cells133and to collect mesenchymal stem cells138selectively.

C.Cancer cells

It has been realized that cellular mechanical phenotyping is a sensitive biomarker to identify cancer cell malignancy.140Thus,high-throughput mechanotyping approaches have long been of great interest in cytopathology research,where sensitive,quantitative,and automated cytological analyses are often required.The nuclear architecture of the cytoplasm(e.g.,chromatin condensation,nuclear envelope shape,metaphase nuclei,and the nuclear–cytoplasmic ratio) is an important target in the conventional determination of the potential malignancy of cancer cells.141,142However,the unreliable sensitivity (40%–90%) of techniques based on this approach often means that malignant samples are missed,leading to inappropriate clinical decisions and treatment.143Besides,long processing times and expensive assay costs resulting from complex manual sample preparation (e.g.,staining for labeling)and prescreening are often burdens for patients in a clinical setting.

Unlike the conventional approach,mechanical phenotyping facilitates label-free assay for rapid identificatio of malignancy with minimal hands-on work and short processing times.Highthroughput quantitative analyses can also provide standardized metrics for risk assessment of malignancy,which is a quite challenging task for qualitative analysis methods such as high-resolution imaging.144Currently,mechanotyping-based approaches have been extensively applied to translational cancer research.For example,Yuet al.145have recently reported that urothelial cells becomes more deformable during malignant transformation and progression,mainly because of an epithelial–mesenchymal transition pathway.Tseet al.146presented a quantitative approach to the diagnosis of malignant pleural effusions with the ability to distinguish leukemias from inflammator processes using label-free biophysical markers.Remmerbachet al.147described an approach to the diagnosis of oral cancer based on screening for suspicious lesions in the oral cavity using quantitative biophysical markers.Such examples suggest that mechanotyping-based technologies could have a significan impact on clinical decision-making for various cancers.

D.Drug testing

Many drugs,such as estramustine,discodermolide,and chloroquine,have effects on cytoskeletal or nuclear properties.148–150They influenc cellular mechanics by modifying cytoskeletal functions,such as by altering microtubule dynamics or increasing oxidative stress.149,150These changes in cellular mechanical properties provide a potential biomarker for evaluation of drug efficac and for drug screening.More specifically drug efficac can be quickly evaluated by changes in the mechanical properties of cells before and after drug treatment,because mechanical properties are expected to exhibit discernible changes if a drug is effective.On the other hand,as a result of drug resistance,cells may show almost no changes.

It has long been recognized that for each disease,there are differences in clinical response to a drug from patient to patient.Compared with the traditional bulk-lysing approach to drug screening,the measurement of single-cell mechanical properties gives a better representation of drug response and tolerance in a heterogeneous population.Besides,the traditional screening method is based on observations of cell death rates,and it requires hundreds of thousands,or even millions,of tests to fin effective drug compounds.Such a time-consuming process is particularly problematic when it is necessary to develop new drugs quickly to deal with the emergence and spread of drug-resistant pathogens(e.g.,malaria).151The availability of a microfluidi mechanotyping device that is able to analyze thousands of single cells in a second would provide a new approach for high-throughput and quantitative drug screening and drug candidate selection.In the meantime,mechanotype-based cell sorting can be used to enrich screening libraries for drugs that affect the architecture of the cytoskeleton or the nucleus.Establishing changes in cellular mechanical properties as a standard mode of drug action will provide positive insights and enable advanced personalized medical and drug treatment.152

Microfluidic has emerged as a promising technology for obtaining quantitative insights into cellular mechanics owing to its ability to carry out manipulation and analysis at the cellular scale.Numerous microfluidi systems have been developed to implement time-dependent characterizations of the size,shape,deformation,and stress/strain relaxation of cells with the aim of understanding the relationships between their mechanical properties and their function.These tools are now laying the foundation for mechanical phenotyping research to be translated into clinical applications.For a successful translation,the following agenda needs to be addressed in the future.

1.Standardization among various testing approaches.Lack of standardization among various characterization techniques poses analytical challenges and limits cross-study comparison.Standardized cell deformation techniques,detection readouts,experimental protocols and setups,and guidelines for interpreting results are urgently needed for further development of microfluidi single-cell mechanotyping devices.

2.Molecular specificityLabel-free deformability cytometry still lacks molecular specificity commonly used to monitor cellular physiological states.In standard flo cytometry techniques,molecular specificit is achieved by the use of fluor escent probes.153Similarly,a fluorescen readout can be integrated into real-time deformability cytometry for characterizing both the mechanical and physical properties of cells.72Furthermore,hybrid measurement opens the possibility of investigating correlations between cell mechanics and molecular properties at the single-cell level.

3.High-throughput deformability-activated sorting.One direction of future research would be to increase the throughput of deformability-activated cell sorting.As discussed,real-time deformability analysis enables active sorting based on the mechanical properties of the cell.While automation of continuous-flo individual cell sorting is of great interest to clinicians and cell biologists,the deficiencie in sorting speed compared with traditional FACS (30 000–40 000 cells/s),limits the practical implementation of this technology.However,further improvements in throughput are expected through parallelization of the system using multiplexed techniques.154,155

High-throughput single-cell mechanical phenotyping using microfluidic is in the early stage of translation.Label-free deformability analysis provides additional insight into aspects that are unclear in conventional assays owing to high phenotypic heterogeneity and inconsistent expression of traditional biomarkers.156,157Moreover,label-free sorting offers enrichment of cells of interest and streamlines clinical decision-making.Advances in microfluidi tools will enable further applications,such as molecular delivery158,159and cell-fate decisions,130,160where label-free single-cell mechanotyping is desired.

ACKNOWLEDGMENTS

This work is partially supported by the National Science Foundation under Grant Nos.1710831 and 2045169.Any opinions,find ings,and conclusions or recommendations expressed in this work are those of the authors and do not necessarily reflec the views of the National Science Foundation.W.G.acknowledges the support of the Penn State Center for Biodevices Seed Grant.

Tags: throughput   single   Microfluidic  

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